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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
37
snATAC-seq
22
ATAC-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
Transcription
59
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
266
October, 2019
223
August, 2017
214
June, 2019
197
May, 2021
151
May, 2020
146
February, 2021
136
August, 2021
118
May, 2019
97
February, 2023
94
December, 2017
80
April, 2019
80
November, 2018
42
May, 2022
41
July, 2019
40
March, 2020
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2018
18
October, 2017
11
May, 2023
10
April, 2020
8
January, 2018
8
January, 2021
6
November, 2019
2
December, 2019
2
November, 2020
1
August, 2018
1
March, 2023
1
October, 2022
Available data
84
txt
27
bam
27
fastq
23
bed narrowPeak
8
tagAlign
6
bigWig
4
bed bedgraph
3
tsv
2
bed bed3
2
bed bed3+
Organism
155
Homo sapiens
Biosample type
105
tissue
29
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
vasculature
10
lung
8
skeleton
6
connective tissue
6
epithelium
6
limb
pancreas
3
kidney
2
liver
Project
119
AMP
27
HPAP
10
LungMap
Genome assembly (visualization)
29
hg19
23
GRCh38
Lab
119
AMP-T2D consortium
27
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
Transcription
organ_slims!
pancreas
BIOSAMPLE
ASSAY
156 results
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RNA microarray
snATAC-seq
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
lung
10
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 8 more…
primary cell
Langerhans cell
27
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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