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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
638
total RNA-seq
125
ATAC-seq
84
RNA microarray
39
snATAC-seq
28
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
666
Transcription
164
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
575
tsv
572
bam
554
bigWig
121
fastq
96
txt
88
bed narrowPeak
12
bed bed3
8
tagAlign
7
bed bedgraph
6
bed bed3+
6
csv
Organism
937
Homo sapiens
Biosample type
659
tissue
136
primary cell
102
cell line
42
in vitro differentiated cells
Organ
469
connective tissue
387
adipose tissue
158
bone element
102
heart
101
artery
101
blood vessel
101
vasculature
88
pancreas
84
epithelium
31
eye
19
lung
16
skeleton
8
kidney
6
limb
3
liver
1
brain
Project
776
AMP
121
HPAP
23
T1D
19
LungMap
Genome assembly (visualization)
619
hg19
603
GRCh38
Lab
773
AMP-T2D consortium
121
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
139
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
939 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
coronary artery
35
lung
10
9
+ See 24 more…
primary cell
Langerhans cell
27
12
exocrine cell
39
pancreatic alpha cell
27
6
pancreatic beta cell
10
gabaergic neuron
3
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
3
2
1
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
5
5
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
+ See 3 more…
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