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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
15
WGBS
3
snDrop-seq
2
RRBS
1
DNase-seq
Assay category
126
DNA binding
28
DNA accessibility
18
Transcription
17
DNA methylation
Target of assay
76
histone
76
histone modification
50
control
48
broad histone mark
28
narrow histone mark
Date released
259
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
135
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
89
txt
77
fastq
50
tagAlign
33
bam
14
tsv
6
csv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
Organism
275
Homo sapiens
Biosample type
197
tissue
57
primary cell
19
in vitro differentiated cells
3
cell line
Organ
84
bone element
61
connective tissue
42
adipose tissue
35
liver
35
pancreas
18
epithelium
11
musculature of body
8
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
231
AMP
45
HPAP
Genome assembly (visualization)
hg19
817
GRCh38
Lab
231
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
276 results
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ChIP-seq
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
RRBS
DNase-seq
tissue
bone element
84
subcutaneous abdominal adipose tissue
35
3
liver
30
1
3
islet of Langerhans
15
skeletal muscle tissue
9
2
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primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
6
pancreatic beta cell
6
in vitro differentiated cells
adipocyte
19
cell line
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
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