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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
RNA microarray
27
snATAC-seq
22
ATAC-seq
21
single cell RNA-seq
6
WGBS
3
pCHi-C
3
snDrop-seq
Assay category
566
Transcription
49
DNA accessibility
DNA binding
6
DNA methylation
Date released
623
February, 2021
291
May, 2020
275
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
8
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
567
bam
562
tsv
549
bigWig
49
fastq
18
bed narrowPeak
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
bedpe bed3+
Organism
627
Homo sapiens
Biosample type
461
tissue
88
cell line
51
primary cell
27
in vitro differentiated cells
Organ
456
connective tissue
387
adipose tissue
66
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
35
epithelium
35
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
582
AMP
45
HPAP
Genome assembly (visualization)
572
hg19
566
GRCh38
Lab
582
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
RNA microarray
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
627 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
snDrop-seq
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
2
6
osteoblast
1
1
1
pancreatic acinar cell
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
white fat cell
1
See all biosamples
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