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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ATAC-seq
48
total RNA-seq
27
snATAC-seq
12
single cell RNA-seq
6
WGBS
4
ChIP-seq
1
pCHi-C
Assay category
128
DNA accessibility
60
Transcription
6
DNA methylation
4
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
97
bam
95
bigWig
52
tsv
45
fastq
4
bed bed3+
4
bed narrowPeak
4
tagAlign
1
bed bed3
Organism
199
Homo sapiens
Biosample type
967
tissue
199
primary cell
141
cell line
68
in vitro differentiated cells
Organ
10
epithelium
6
pancreas
4
liver
3
connective tissue
Project
109
AMP
45
HPAP
45
T1D
Genome assembly (visualization)
96
hg19
50
GRCh38
Lab
109
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
27
audit script error
8
inconsistent ontology term
BIOSAMPLE
ASSAY
199 results
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Clear Filters
ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
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