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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
570
total RNA-seq
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
588
Transcription
49
DNA accessibility
DNA binding
6
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
584
tsv
564
bam
546
bigWig
89
txt
45
fastq
18
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
732
Homo sapiens
Biosample type
570
tissue
88
cell line
48
primary cell
26
in vitro differentiated cells
Organ
457
connective tissue
388
adipose tissue
150
bone element
63
blood vessel
63
heart
63
vasculature
62
artery
33
pancreas
32
epithelium
12
brain
9
limb
8
kidney
8
skeleton
4
liver
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
687
AMP
45
HPAP
Genome assembly (visualization)
569
hg19
563
GRCh38
Lab
687
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
129
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
732 results
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total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
subcutaneous adipose tissue
3
+ See 37 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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