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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
638
total RNA-seq
125
ATAC-seq
84
RNA microarray
29
snATAC-seq
19
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
125
DNA accessibility
Date released
103
February, 2023
100
May, 2020
77
May, 2022
76
August, 2021
34
May, 2021
26
November, 2019
22
February, 2021
22
October, 2019
14
September, 2018
11
May, 2023
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
November, 2020
Available data
83
bed narrowPeak
18
bam
12
bed bed3
12
tsv
7
bed bedgraph
4
bed bed3+
4
bigWig
3
txt
Organism
125
Homo sapiens
Biosample type
87
tissue
16
in vitro differentiated cells
13
primary cell
9
cell line
Organ
43
artery
43
blood vessel
43
heart
43
vasculature
27
eye
15
connective tissue
12
bone element
12
epithelium
12
skeleton
11
pancreas
6
limb
1
adipose tissue
1
brain
1
liver
Project
114
AMP
11
T1D
Genome assembly (visualization)
67
hg19
53
GRCh38
Lab
111
AMP-T2D consortium
11
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
125 results
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Clear Filters
ATAC-seq
tissue
coronary artery
35
retina
15
pigmented layer of retina
12
islet of Langerhans
11
acetabular part of hip bone
1
+ See 13 more…
in vitro differentiated cells
adipocyte
5
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
+ See 2 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
osteoblast
1
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
See all biosamples
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