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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
638
total RNA-seq
125
ATAC-seq
84
RNA microarray
66
single cell RNA-seq
29
snATAC-seq
8
ChIP-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
3
snDrop-seq
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
Assay category
704
Transcription
154
DNA accessibility
8
DNA binding
6
DNA methylation
3
3D chromatin structure
Target of assay
5
transcription factor
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
575
tsv
572
bam
554
bigWig
121
fastq
97
txt
88
bed narrowPeak
12
bed bed3
8
tagAlign
7
bed bedgraph
6
bed bed3+
6
csv
3
bedpe bed3+
3
cool
3
hic
Organism
969
Homo sapiens
Biosample type
687
tissue
139
primary cell
103
cell line
42
in vitro differentiated cells
Organ
469
connective tissue
387
adipose tissue
158
bone element
102
heart
101
artery
101
blood vessel
101
vasculature
91
pancreas
87
epithelium
55
kidney
31
eye
16
skeleton
6
limb
3
liver
1
brain
Project
777
AMP
124
HPAP
47
KPMP
23
T1D
Genome assembly (visualization)
622
hg19
603
GRCh38
Lab
774
AMP-T2D consortium
124
Klaus Kaestner, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
139
inconsistent ontology term
35
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
971 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ChIP-seq
WGBS
CRISPR genome editing followed by DNA sequencing
Hi-C
snDrop-seq
HiChIP
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
kidney
52
coronary artery
35
+ See 23 more…
primary cell
Langerhans cell
12
27
exocrine cell
39
pancreatic alpha cell
27
6
1
pancreatic beta cell
10
1
gabaergic neuron
3
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
3
2
1
HepG2
1
1
iPSC derived cell line
2
MIN6
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
5
5
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
+ See 3 more…
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