Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
total RNA-seq
124
ATAC-seq
86
RNA microarray
29
snATAC-seq
22
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
279
Transcription
153
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
198
tsv
191
bam
173
bigWig
121
fastq
96
txt
87
bed narrowPeak
12
bed bed3
8
tagAlign
7
bed bedgraph
6
bed bed3+
6
csv
Organism
542
Homo sapiens
Biosample type
256
tissue
141
primary cell
102
cell line
44
in vitro differentiated cells
Organ
469
connective tissue
adipose tissue
158
bone element
102
heart
101
artery
101
blood vessel
101
vasculature
90
epithelium
88
pancreas
31
eye
16
skeleton
11
kidney
8
liver
6
limb
1
brain
Project
399
AMP
121
HPAP
23
T1D
Genome assembly (visualization)
237
hg19
222
GRCh38
Lab
396
AMP-T2D consortium
121
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
141
inconsistent ontology term
36
audit script error
1
inconsistent replicate
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
543 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
tissue
bone element
84
bone tissue
58
coronary artery
35
islet of Langerhans
5
11
2
retina
2
15
+ See 22 more…
primary cell
Langerhans cell
27
12
exocrine cell
39
pancreatic alpha cell
27
6
pancreatic beta cell
10
hepatocyte
5
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
3
2
1
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
5
5
chondrocyte
5
immature adipocyte
2
2
cardiomyocytes (cardiac muscle cell)
2
+ See 4 more…
See all biosamples
Download