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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
total RNA-seq
13
ATAC-seq
6
WGBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
65
Transcription
13
DNA accessibility
6
DNA methylation
Date released
121
October, 2019
91
November, 2017
80
May, 2022
61
September, 2018
53
February, 2023
48
June, 2019
33
April, 2018
33
July, 2018
33
May, 2019
32
February, 2021
29
August, 2017
29
July, 2019
26
May, 2021
19
December, 2017
19
September, 2020
16
November, 2019
16
October, 2017
12
February, 2020
8
March, 2020
7
August, 2020
6
August, 2021
6
December, 2019
6
November, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
November, 2018
2
October, 2018
1
June, 2018
Available data
43
fastq
34
tsv
26
bam
26
bigWig
12
bed narrowPeak
1
bed bed3
Organism
84
Homo sapiens
Biosample type
43
primary cell
27
cell line
15
tissue
Organ
469
connective tissue
387
adipose tissue
158
bone element
102
heart
101
artery
101
blood vessel
101
vasculature
88
pancreas
84
epithelium
31
eye
16
skeleton
8
kidney
6
limb
3
liver
1
brain
Project
43
HPAP
42
AMP
Genome assembly (visualization)
39
hg19
26
GRCh38
Lab
43
Klaus Kaestner, Upenn
42
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
BIOSAMPLE
ASSAY
85 results
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Clear Filters
total RNA-seq
ATAC-seq
WGBS
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
6
pancreatic beta cell
10
cell line
EndoC_BH1
26
1
tissue
pigmented layer of retina
2
12
brain
1
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