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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
594
total RNA-seq
84
RNA microarray
33
ChIP-seq
28
ATAC-seq
27
snATAC-seq
21
single cell RNA-seq
18
WGBS
18
small RNA-seq
15
RRBS
8
Hi-C
3
snDrop-seq
2
FAIRE-seq
2
pCHi-C
Assay category
633
Transcription
57
DNA accessibility
33
DNA binding
33
DNA methylation
8
3D chromatin structure
Target of assay
19
transcription factor
10
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
684
bam
662
bigWig
629
tsv
89
txt
75
fastq
51
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
23
bigBed narrowPeak
8
tagAlign
6
bed bed3+
6
csv
4
bed bedgraph
4
hdf5
2
bed bed3
Organism
853
Homo sapiens
Biosample type
629
tissue
119
cell line
79
primary cell
26
in vitro differentiated cells
Organ
473
connective tissue
398
adipose tissue
150
bone element
91
heart
78
vasculature
77
blood vessel
69
artery
45
epithelium
38
pancreas
19
kidney
18
blood
18
bodily fluid
18
brain
18
liver
11
limb
10
musculature of body
8
skeleton
7
spleen
2
pericardium
1
eye
Project
808
AMP
45
HPAP
Genome assembly (visualization)
691
hg19
673
GRCh38
Lab
808
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
130
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
853 results
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Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
RRBS
Hi-C
snDrop-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
heart left ventricle
2
2
4
1
kidney
5
1
1
+ See 42 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
GM12878
18
HepG2
5
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
+ See 23 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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