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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
24
ATAC-seq
13
single cell RNA-seq
11
ChIP-seq
10
Hi-C
4
pCHi-C
2
total RNA-seq
Assay category
51
DNA accessibility
15
Transcription
11
DNA binding
10
3D chromatin structure
Target of assay
5
transcription factor
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
588
bam
571
bigWig
89
txt
45
fastq
26
bed narrowPeak
12
bedpe bed3+
10
hic
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
Organism
175
Homo sapiens
Biosample type
105
tissue
42
primary cell
20
cell line
8
in vitro differentiated cells
Organ
92
bone element
16
blood vessel
16
heart
16
vasculature
14
artery
8
pancreas
8
skeleton
6
connective tissue
6
limb
4
liver
3
epithelium
2
musculature of body
1
vein
Project
131
AMP
39
HPAP
5
T1D
Genome assembly (visualization)
46
hg19
26
GRCh38
Lab
136
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
90
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
BIOSAMPLE
ASSAY
175 results
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Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
tissue
bone element
84
islet of Langerhans
1
2
2
liver
1
1
psoas muscle
2
aorta
1
+ See 11 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
endothelial cell of umbilical vein
1
cell line
smooth muscle cell of the coronary artery
8
6
EndoC_BH1
1
1
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
See all biosamples
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