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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
total RNA-seq
122
ATAC-seq
84
RNA microarray
58
ChIP-seq
6
single cell RNA-seq
3
pCHi-C
3
snDrop-seq
Assay category
741
Transcription
122
DNA accessibility
58
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
855
bam
811
bigWig
748
tsv
89
txt
58
tagAlign
50
bed narrowPeak
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
1011
Homo sapiens
Biosample type
738
tissue
150
primary cell
97
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
197
liver
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
Project
966
AMP
45
T1D
Genome assembly (visualization)
834
hg19
775
GRCh38
Lab
966
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
136
inconsistent ontology term
5
audit script error
1
inconsistent replicate
files.file_type!
fastq
BIOSAMPLE
ASSAY
1011 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
single cell RNA-seq
pCHi-C
snDrop-seq
tissue
adipose tissue
381
liver
143
50
1
bone element
84
bone tissue
58
kidney
5
+ See 13 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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