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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
779
total RNA-seq
128
ATAC-seq
84
RNA microarray
58
ChIP-seq
27
snATAC-seq
21
single cell RNA-seq
18
WGBS
18
small RNA-seq
15
RRBS
8
Hi-C
3
pCHi-C
3
snDrop-seq
2
FAIRE-seq
Assay category
818
Transcription
157
DNA accessibility
58
DNA binding
33
DNA methylation
8
3D chromatin structure
Target of assay
29
control
27
histone
27
histone modification
27
narrow histone mark
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
937
bam
896
bigWig
813
tsv
89
txt
58
tagAlign
57
bed narrowPeak
45
fastq
23
bed bedMethyl
23
bigBed bedMethyl
6
bed bed3+
6
csv
4
bed bedgraph
4
hdf5
2
bed bed3
2
bigBed narrowPeak
Organism
1164
Homo sapiens
Biosample type
815
tissue
226
primary cell
97
cell line
26
in vitro differentiated cells
Organ
473
connective tissue
398
adipose tissue
207
liver
150
bone element
91
heart
78
vasculature
77
blood vessel
69
artery
45
epithelium
38
pancreas
19
kidney
18
brain
11
limb
10
musculature of body
8
skeleton
2
pericardium
1
eye
Project
1074
AMP
45
HPAP
45
T1D
Genome assembly (visualization)
925
hg19
854
GRCh38
Lab
1074
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
138
inconsistent ontology term
32
audit script error
1
inconsistent replicate
month_released!
November, 2019
BIOSAMPLE
ASSAY
1164 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
snDrop-seq
FAIRE-seq
tissue
adipose tissue
381
liver
145
50
1
1
bone element
84
bone tissue
58
heart left ventricle
2
2
4
1
+ See 41 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 52 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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