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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
total RNA-seq
138
ChIP-seq
122
ATAC-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
pCHi-C
3
snDrop-seq
Assay category
753
Transcription
149
DNA accessibility
138
DNA binding
6
DNA methylation
Target of assay
87
histone
87
histone modification
50
narrow histone mark
40
control
37
broad histone mark
11
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
934
bam
876
bigWig
748
tsv
115
bed narrowPeak
89
txt
64
bigBed narrowPeak
58
tagAlign
45
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
1136
Homo sapiens
Biosample type
818
tissue
195
primary cell
97
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
197
liver
150
bone element
123
heart
66
artery
66
blood vessel
66
vasculature
32
epithelium
32
pancreas
31
kidney
8
skeleton
6
limb
Project
1046
AMP
45
HPAP
45
T1D
Genome assembly (visualization)
899
hg19
839
GRCh38
Lab
1046
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
136
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
1136 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
pCHi-C
snDrop-seq
tissue
adipose tissue
381
liver
143
50
1
bone element
84
bone tissue
58
heart left ventricle
35
+ See 16 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 27 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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