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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
853
total RNA-seq
225
ATAC-seq
84
RNA microarray
58
ChIP-seq
29
snATAC-seq
19
single cell RNA-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
pCHi-C
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
872
Transcription
254
DNA accessibility
58
DNA binding
6
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
855
bam
814
bigWig
789
tsv
121
fastq
115
bed narrowPeak
96
txt
58
tagAlign
12
bed bed3
7
bed bedgraph
6
bed bed3+
6
csv
Organism
1285
Homo sapiens
Biosample type
858
tissue
283
primary cell
103
cell line
42
in vitro differentiated cells
Organ
471
connective tissue
389
adipose tissue
198
liver
158
bone element
105
heart
104
blood vessel
104
vasculature
103
artery
89
pancreas
84
epithelium
32
eye
16
skeleton
13
brain
9
limb
8
kidney
2
musculature of body
1
nerve
1
spinal cord
Project
1097
AMP
121
HPAP
68
T1D
Genome assembly (visualization)
879
hg19
810
GRCh38
Lab
1094
AMP-T2D consortium
121
Klaus Kaestner, Upenn
68
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
148
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
1286 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
CRISPR genome editing followed by DNA sequencing
pCHi-C
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
tissue
adipose tissue
381
1
liver
143
50
1
bone element
84
bone tissue
58
coronary artery
1
35
+ See 45 more…
primary cell
Langerhans cell
27
12
exocrine cell
39
pancreatic alpha cell
27
6
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
+ See 33 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
3
2
1
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
5
5
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
+ See 3 more…
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