Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
709
total RNA-seq
122
ATAC-seq
84
RNA microarray
58
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
3
pCHi-C
3
snDrop-seq
Assay category
727
Transcription
149
DNA accessibility
58
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
829
bam
785
bigWig
716
tsv
89
txt
58
tagAlign
50
bed narrowPeak
39
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
1024
Homo sapiens
Biosample type
738
tissue
189
primary cell
71
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
197
liver
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
pancreas
8
kidney
8
skeleton
6
limb
Project
940
AMP
45
T1D
39
HPAP
Genome assembly (visualization)
808
hg19
749
GRCh38
Lab
940
AMP-T2D consortium
45
Kyle Gaulton, UCSD
39
Klaus Kaestner, Upenn
Audit category:
110
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1024 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
snDrop-seq
tissue
adipose tissue
381
liver
143
50
1
bone element
84
bone tissue
58
kidney
5
+ See 13 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
+ See 26 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
See all biosamples
Download