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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
total RNA-seq
122
ATAC-seq
84
RNA microarray
32
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
pCHi-C
3
snDrop-seq
Assay category
753
Transcription
149
DNA accessibility
32
DNA binding
6
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
control
5
transcription factor
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
829
bam
811
bigWig
748
tsv
89
txt
50
bed narrowPeak
45
fastq
32
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
1030
Homo sapiens
Biosample type
715
tissue
195
primary cell
94
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
174
liver
150
bone element
64
artery
64
blood vessel
64
heart
64
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
Project
940
AMP
45
HPAP
45
T1D
Genome assembly (visualization)
834
hg19
775
GRCh38
Lab
940
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
136
inconsistent ontology term
32
audit script error
1
inconsistent replicate
target.investigated_as!
control
BIOSAMPLE
ASSAY
1030 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
pCHi-C
snDrop-seq
tissue
adipose tissue
381
liver
143
27
1
bone element
84
bone tissue
58
kidney
5
+ See 13 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 27 more…
cell line
smooth muscle cell of the coronary artery
52
8
4
EndoC_BH1
26
HepG2
1
2
iPSC derived cell line
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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