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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
total RNA-seq
122
ATAC-seq
84
RNA microarray
53
ChIP-seq
37
snATAC-seq
27
single cell RNA-seq
6
WGBS
3
pCHi-C
3
snDrop-seq
Assay category
762
Transcription
159
DNA accessibility
53
DNA binding
6
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
transcription factor
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
850
bam
806
bigWig
748
tsv
89
txt
53
tagAlign
45
bed narrowPeak
45
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
1069
Homo sapiens
Biosample type
757
tissue
195
primary cell
92
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
197
liver
150
bone element
62
artery
62
blood vessel
62
heart
62
vasculature
32
epithelium
32
pancreas
19
lung
8
kidney
8
skeleton
6
limb
Project
961
AMP
45
HPAP
45
T1D
19
LungMap
Genome assembly (visualization)
829
hg19
770
GRCh38
Lab
961
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
Audit category:
136
inconsistent ontology term
32
audit script error
1
inconsistent replicate
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1070 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
pCHi-C
snDrop-seq
tissue
adipose tissue
381
liver
143
50
1
bone element
84
bone tissue
58
lung
10
9
+ See 14 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 27 more…
cell line
smooth muscle cell of the coronary artery
52
8
2
EndoC_BH1
26
HepG2
1
2
iPSC derived cell line
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
See all biosamples
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