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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
total RNA-seq
122
ATAC-seq
84
RNA microarray
27
snATAC-seq
26
ChIP-seq
18
single cell RNA-seq
6
WGBS
3
pCHi-C
3
snDrop-seq
Assay category
753
Transcription
149
DNA accessibility
26
DNA binding
6
DNA methylation
Target of assay
27
histone
histone modification
27
narrow histone mark
26
control
transcription factor
Date released
710
February, 2021
314
May, 2020
288
August, 2021
243
May, 2021
205
February, 2023
200
May, 2022
195
June, 2019
168
July, 2018
165
August, 2017
111
October, 2019
108
July, 2019
74
November, 2017
61
March, 2020
59
September, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
31
October, 2018
25
February, 2020
24
November, 2018
23
February, 2018
23
May, 2019
21
December, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
14
April, 2019
11
October, 2017
11
September, 2017
10
December, 2019
9
January, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
823
bam
779
bigWig
748
tsv
89
txt
45
fastq
26
tagAlign
18
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
1024
Homo sapiens
Biosample type
711
tissue
195
primary cell
92
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
170
liver
150
bone element
62
artery
62
blood vessel
62
heart
62
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
Project
934
AMP
45
HPAP
45
T1D
Genome assembly (visualization)
802
hg19
751
GRCh38
Lab
934
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
136
inconsistent ontology term
32
audit script error
1
inconsistent replicate
target.investigated_as!
transcription factor
histone modification
BIOSAMPLE
ASSAY
1024 results
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total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
snDrop-seq
tissue
adipose tissue
381
liver
143
23
1
bone element
84
bone tissue
58
kidney
5
+ See 13 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 27 more…
cell line
smooth muscle cell of the coronary artery
52
8
2
EndoC_BH1
26
HepG2
1
2
iPSC derived cell line
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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