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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
565
total RNA-seq
187
DNase-seq
84
RNA microarray
52
ChIP-seq
48
ATAC-seq
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
Hi-C
2
pCHi-C
Assay category
583
Transcription
262
DNA accessibility
52
DNA binding
6
DNA methylation
2
3D chromatin structure
Target of assay
29
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
13
control
10
transcription factor
5
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
849
bam
792
bigWig
579
tsv
270
bed narrowPeak
210
bigBed narrowPeak
189
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
89
txt
45
fastq
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bedpe bed3+
2
hic
Organism
994
Homo sapiens
Biosample type
748
tissue
112
cell line
103
primary cell
31
in vitro differentiated cells
Organ
474
connective tissue
388
adipose tissue
150
bone element
101
heart
91
pancreas
89
kidney
73
vasculature
71
blood vessel
68
artery
68
epithelium
43
musculature of body
38
limb
30
brain
18
ureter
8
skeleton
7
eye
5
liver
Project
949
AMP
45
HPAP
Genome assembly (visualization)
835
GRCh38
820
hg19
Lab
949
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
176
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
994 results
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Clear Filters
total RNA-seq
DNase-seq
RNA microarray
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
Hi-C
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
19
19
1
heart
18
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cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
27
13
1
1
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
pancreatic alpha cell
6
+ See 20 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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