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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
549
total RNA-seq
84
RNA microarray
27
snATAC-seq
23
ATAC-seq
18
single cell RNA-seq
10
MeRIP-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
1
DNase-seq
Assay category
567
Transcription
51
DNA accessibility
8
DNA binding
DNA methylation
Target of assay
8
control
5
nucleotide modification
5
transcription factor
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
578
bam
557
tsv
556
bigWig
89
txt
39
fastq
25
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
3
bed bed3+
2
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
725
Homo sapiens
Biosample type
549
tissue
102
cell line
48
primary cell
26
in vitro differentiated cells
Organ
461
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
36
pancreas
32
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
686
AMP
39
HPAP
Genome assembly (visualization)
580
hg19
574
GRCh38
Lab
676
AMP-T2D consortium
39
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
134
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
725 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
MeRIP-seq
ChIP-seq
snDrop-seq
pCHi-C
DNase-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
islet of Langerhans
4
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
5
2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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