Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
549
total RNA-seq
88
ChIP-seq
84
RNA microarray
27
snATAC-seq
23
ATAC-seq
18
single cell RNA-seq
10
MeRIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
1
DNase-seq
Assay category
567
Transcription
88
DNA binding
51
DNA accessibility
6
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
22
control
11
transcription factor
5
nucleotide modification
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
657
bam
621
bigWig
563
tsv
90
bed narrowPeak
89
txt
65
bigBed narrowPeak
45
fastq
8
tagAlign
6
csv
4
bed bedgraph
3
bed bed3+
2
bed bed3
1
bed broadPeak
1
bigBed broadPeak
Organism
811
Homo sapiens
Biosample type
629
tissue
102
cell line
54
primary cell
26
in vitro differentiated cells
Organ
461
connective tissue
386
adipose tissue
150
bone element
123
heart
66
artery
66
blood vessel
66
vasculature
42
pancreas
38
epithelium
31
kidney
8
skeleton
6
limb
3
liver
Project
766
AMP
45
HPAP
Genome assembly (visualization)
645
hg19
638
GRCh38
Lab
756
AMP-T2D consortium
45
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
134
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
811 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
MeRIP-seq
WGBS
snDrop-seq
pCHi-C
DNase-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
heart left ventricle
35
kidney
23
5
+ See 17 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
5
2
1
1
pancreatic alpha cell
6
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
See all biosamples
Download