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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
12
single cell RNA-seq
9
ChIP-seq
8
ATAC-seq
Assay category
35
DNA accessibility
12
Transcription
9
DNA binding
DNA methylation
Target of assay
7
histone
7
histone modification
6
broad histone mark
2
control
1
narrow histone mark
Date released
324
November, 2017
279
August, 2017
94
December, 2017
81
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
44
April, 2018
41
September, 2020
39
February, 2018
39
February, 2021
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
587
bam
565
bigWig
553
tsv
89
txt
56
fastq
35
bed narrowPeak
22
tagAlign
6
bigBed narrowPeak
6
csv
4
bed bedgraph
4
bed broadPeak
2
bed bed3
2
bed bed3+
Organism
56
Homo sapiens
Biosample type
39
primary cell
17
tissue
Organ
10
brain
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
39
HPAP
17
AMP
Genome assembly (visualization)
14
GRCh38
13
hg19
Lab
39
Klaus Kaestner, Upenn
16
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
audit script error
Audit category:
4
missing controlled_by
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
56 results
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snATAC-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
primary cell
Langerhans cell
27
12
tissue
brain
9
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
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