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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
total RNA-seq
195
ChIP-seq
84
RNA microarray
6
single cell RNA-seq
4
pCHi-C
3
snDrop-seq
1
Hi-C
Assay category
472
Transcription
195
DNA binding
DNA accessibility
1
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
537
February, 2021
279
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
624
bam
597
bigWig
460
tsv
145
bed narrowPeak
89
txt
49
tagAlign
42
bigBed narrowPeak
6
csv
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
759
Homo sapiens
Biosample type
759
tissue
115
cell line
47
primary cell
26
in vitro differentiated cells
Organ
445
connective tissue
386
adipose tissue
142
bone element
85
brain
63
limb
39
nerve
23
artery
23
blood vessel
23
vasculature
20
eye
12
kidney
8
heart
7
liver
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
759
AMP
Genome assembly (visualization)
600
hg19
599
GRCh38
Lab
759
AMP-T2D consortium
Audit category:
86
inconsistent ontology term
5
audit script error
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
759 results
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total RNA-seq
ChIP-seq
RNA microarray
single cell RNA-seq
pCHi-C
snDrop-seq
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
14
21
4
tibial nerve
4
35
tibial artery
23
kidney
4
5
heart
2
5
1
liver
1
5
1
brain
1
5
superior frontal gyrus
4
central medial thalamic nucleus
3
middle temporal gyrus
3
visceral abdominal adipose tissue
3
angular gyrus
2
anterior cingulate gyrus
2
cerebellum (Hemisphere)
2
gyrus rectus
2
medial globus pallidus
2
middle frontal gyrus
2
occipital pole
2
posterior cingulate gyrus
2
precuneus cortex
2
primary motor cortex
2
putamen
2
secondary auditory cortex
2
subcutaneous adipose tissue
2
superior parietal cortex
2
supramarginal gyrus
2
white matter
2
agranular insular cortex
1
amygdala
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
body of caudate nucleus
1
brodmann area 43
1
claustrum of brain
1
cuneus
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dorsal plus ventral thalamus
1
external globus pallidus
1
fastigial nucleus
1
frontal pole
1
head of caudate nucleus
1
hippocampal gyrus
1
hypothalamus
1
inferior frontal gyrus
1
inferior temporal gyrus
1
insular gyrus
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
lateral hypothalamic area
1
lateral occipital gyrus
1
lateral septal nucleus
1
layer of hippocampus
1
lingual gyrus
1
locus coeruleus
1
mammillary body
1
medial dorsal nucleus of thalamus
1
medial geniculate nucleus
1
medial segment of precentral gyrus
1
midbrain tectum
1
myelencephalon
1
nucleus accumbens
1
olivary body
1
orbital gyrus
1
paraterminal gyrus
1
pineal body
1
piriform cortex
1
pituitary gland
1
planum polare
1
planum temporale
1
pons
1
postcentral gyrus
1
primary somatosensory cortex
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
subiculum
1
substantia nigra
1
substantia nigra pars reticulata
1
subthalamic nucleus
1
superior occipital gyrus
1
suprachiasmatic nucleus
1
temporal pole
1
transverse temporal gyrus
1
uncus of parahippocampal gyrus
1
ventral anterior nucleus of thalamus
1
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