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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
475
total RNA-seq
197
ChIP-seq
84
RNA microarray
26
ATAC-seq
24
pCHi-C
8
Hi-C
6
single cell RNA-seq
4
DNase-seq
3
snDrop-seq
Assay category
481
Transcription
197
DNA binding
30
DNA accessibility
8
3D chromatin structure
Target of assay
170
histone
170
histone modification
131
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
647
bam
615
bigWig
488
tsv
161
bed narrowPeak
89
txt
49
tagAlign
47
bigBed narrowPeak
8
bedpe bed3+
8
hic
6
csv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
tagAlign bed3+
Organism
827
Homo sapiens
Biosample type
827
tissue
137
cell line
83
primary cell
42
in vitro differentiated cells
4
stem cell
Organ
447
connective tissue
388
adipose tissue
150
bone element
88
brain
75
limb
42
nerve
29
blood vessel
29
vasculature
26
artery
21
eye
15
heart
12
kidney
12
pancreas
10
liver
8
skeleton
5
gonad
5
musculature of body
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
skin of body
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
823
AMP
4
T1D
Genome assembly (visualization)
633
hg19
622
GRCh38
Lab
827
AMP-T2D consortium
Audit category:
88
inconsistent ontology term
5
audit script error
BIOSAMPLE
ASSAY
827 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
pCHi-C
Hi-C
single cell RNA-seq
DNase-seq
snDrop-seq
tissue
adipose tissue
381
1
1
bone element
84
bone tissue
58
islet of Langerhans
16
23
15
4
tibial nerve
4
35
1
2
tibial artery
23
1
2
liver
2
5
1
1
1
kidney
4
5
heart
2
5
1
brain
1
5
psoas muscle
2
1
2
superior frontal gyrus
4
aorta
1
1
1
central medial thalamic nucleus
3
heart left ventricle
1
1
1
heart right ventricle
1
1
1
middle temporal gyrus
3
pancreas
1
1
1
visceral abdominal adipose tissue
3
angular gyrus
2
anterior cingulate gyrus
2
cerebellum (Hemisphere)
2
gyrus rectus
2
medial globus pallidus
2
middle frontal gyrus
2
occipital pole
2
posterior cingulate gyrus
2
precuneus cortex
2
primary motor cortex
2
putamen
2
secondary auditory cortex
2
subcutaneous adipose tissue
2
superior parietal cortex
2
supramarginal gyrus
2
white matter
2
Ammon's horn
1
adrenal gland
1
agranular insular cortex
1
amygdala
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
bladder (urinary bladder)
1
body of caudate nucleus
1
brodmann area 43
1
claustrum of brain
1
cuneus
1
dentate nucleus
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dorsal plus ventral thalamus
1
dorsolateral prefrontal cortex
1
esophagus
1
external globus pallidus
1
fastigial nucleus
1
frontal pole
1
gastric (mucosa of stomach)
1
head of caudate nucleus
1
hippocampal gyrus
1
hypothalamus
1
inferior frontal gyrus
1
inferior temporal gyrus
1
insular gyrus
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
lateral hypothalamic area
1
lateral occipital gyrus
1
lateral septal nucleus
1
layer of hippocampus
1
lingual gyrus
1
locus coeruleus
1
lung
1
mammillary body
1
medial dorsal nucleus of thalamus
1
medial geniculate nucleus
1
medial segment of precentral gyrus
1
midbrain tectum
1
myelencephalon
1
nucleus accumbens
1
olivary body
1
orbital gyrus
1
ovary
1
paraterminal gyrus
1
pineal body
1
piriform cortex
1
pituitary gland
1
planum polare
1
planum temporale
1
pons
1
postcentral gyrus
1
primary somatosensory cortex
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
right cardiac atrium
1
sigmoid colon
1
small intestine
1
spleen
1
subiculum
1
substantia nigra
1
substantia nigra pars reticulata
1
subthalamic nucleus
1
superior occipital gyrus
1
suprachiasmatic nucleus
1
temporal pole
1
thymus
1
transverse temporal gyrus
1
uncus of parahippocampal gyrus
1
ventral anterior nucleus of thalamus
1
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