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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
46
ChIP-seq
9
ATAC-seq
4
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
52
Transcription
46
DNA binding
14
DNA accessibility
1
3D chromatin structure
Target of assay
33
histone
33
histone modification
23
broad histone mark
10
narrow histone mark
9
control
4
transcription factor
Date released
66
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
11
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
November, 2017
Available data
112
bam
92
bigWig
52
tsv
46
bed narrowPeak
33
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
4
bed bed3+
1
hic
1
tar
Organism
113
Homo sapiens
Biosample type
66
cell line
26
tissue
21
primary cell
Organ
459
connective tissue
387
adipose tissue
150
bone element
113
blood vessel
113
vasculature
92
artery
86
brain
75
limb
74
heart
67
epithelium
50
pancreas
42
nerve
38
kidney
21
eye
21
vein
10
liver
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
113
AMP
Genome assembly (visualization)
101
hg19
97
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
November, 2017
BIOSAMPLE
ASSAY
113 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
tibial artery
23
1
2
primary cell
endothelial cell of umbilical vein
17
2
1
1
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