Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
28
ChIP-seq
6
WGBS
5
DNase-seq
2
Capture-C
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
29
Transcription
28
DNA binding
7
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
24
histone
24
histone modification
13
broad histone mark
11
narrow histone mark
4
control
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
62
bam
54
bigWig
35
tsv
24
bed narrowPeak
14
bigBed narrowPeak
6
fastq
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
1
hic
1
tar
Organism
73
Homo sapiens
Biosample type
43
primary cell
30
cell line
Organ
464
connective tissue
388
adipose tissue
168
kidney
166
heart
150
bone element
119
blood vessel
119
vasculature
94
artery
86
brain
75
limb
73
epithelium
54
pancreas
45
liver
42
nerve
21
eye
21
vein
8
embryo
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
67
AMP
6
HPAP
Genome assembly (visualization)
56
hg19
52
GRCh38
Lab
67
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
29
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
73 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
WGBS
DNase-seq
Capture-C
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
pancreatic alpha cell
6
hepatocyte
4
kidney glomerular epithelial cell
1
1
+ See 2 more…
cell line
EndoC_BH1
26
2
glomerular visceral epithelial cell
1
1
See all biosamples
Download