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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
591
total RNA-seq
58
single cell RNA-seq
Assay category
649
Transcription
250
DNA binding
85
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Date released
563
February, 2021
190
May, 2020
182
May, 2021
180
August, 2021
168
July, 2018
94
February, 2023
89
August, 2017
65
July, 2019
60
May, 2022
56
September, 2020
49
April, 2018
47
September, 2023
30
October, 2019
27
September, 2018
25
February, 2020
20
November, 2019
15
February, 2018
15
March, 2020
9
April, 2020
8
December, 2019
5
January, 2019
4
March, 2023
4
May, 2023
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
566
tsv
561
bam
561
bigWig
50
fastq
19
zippedFastqFolder
6
csv
5
txt
Organism
649
Homo sapiens
Biosample type
472
tissue
82
cell line
71
primary cell
24
in vitro differentiated cells
Organ
449
connective tissue
386
adipose tissue
58
bone element
54
heart
52
artery
52
blood vessel
52
vasculature
45
epithelium
42
pancreas
14
eye
11
kidney
4
limb
4
nerve
2
liver
1
brain
Project
581
AMP
68
HPAP
Genome assembly (visualization)
561
GRCh38
561
hg19
Lab
581
AMP-T2D consortium
68
Klaus Kaestner, Upenn
Audit category:
49
inconsistent ontology term
5
audit script error
BIOSAMPLE
ASSAY
649 results
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Clear Filters
total RNA-seq
single cell RNA-seq
tissue
adipose tissue
381
bone tissue
58
islet of Langerhans
14
kidney
5
tibial nerve
4
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
26
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
+ See 1 more…
primary cell
Langerhans cell
52
pancreatic alpha cell
15
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
+ See 1 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
19
adipocyte
4
cardiomyocytes (cardiac muscle cell)
1
See all biosamples
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