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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
27
ATAC-seq
27
snATAC-seq
18
single cell RNA-seq
14
ChIP-seq
6
WGBS
3
snDrop-seq
pCHi-C
Assay category
563
Transcription
54
DNA accessibility
14
DNA binding
6
DNA methylation
Target of assay
9
control
5
transcription factor
Date released
713
February, 2021
411
August, 2017
406
November, 2017
382
May, 2021
340
May, 2020
319
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
32
March, 2020
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
582
bam
559
tsv
556
bigWig
89
txt
56
fastq
28
bed narrowPeak
8
tagAlign
6
csv
5
bigBed narrowPeak
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
724
Homo sapiens
Biosample type
551
tissue
95
cell line
52
primary cell
26
in vitro differentiated cells
Organ
454
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
43
pancreas
37
epithelium
8
kidney
8
skeleton
6
limb
2
liver
Project
679
AMP
45
HPAP
Genome assembly (visualization)
579
hg19
575
GRCh38
Lab
679
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
724 results
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Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
6
kidney
5
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
2
6
osteoblast
1
1
pancreatic beta cell
2
pancreatic acinar cell
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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