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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
27
snATAC-seq
26
total RNA-seq
14
ATAC-seq
12
single cell RNA-seq
6
WGBS
Assay category
41
DNA accessibility
38
Transcription
32
DNA binding
6
DNA methylation
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
324
November, 2017
287
August, 2017
94
December, 2017
87
November, 2018
76
February, 2023
72
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
644
bam
623
bigWig
585
tsv
118
fastq
89
txt
69
bed narrowPeak
14
bigBed narrowPeak
8
tagAlign
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
117
Homo sapiens
Biosample type
117
primary cell
Organ
78
pancreas
67
epithelium
Project
72
AMP
45
HPAP
Genome assembly (visualization)
72
GRCh38
72
hg19
Lab
72
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
27
audit script error
Audit category:
32
missing controlled_by
files.file_type!
csv
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
primary cell
Langerhans cell
27
12
pancreatic ductal cell
13
4
4
pancreatic alpha cell
10
3
6
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
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