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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
25
ATAC-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
Transcription
52
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
84
txt
36
fastq
27
bam
23
bed narrowPeak
9
bigWig
9
tsv
8
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
155
Homo sapiens
Biosample type
95
tissue
38
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
vasculature
9
epithelium
9
pancreas
8
skeleton
6
connective tissue
6
limb
3
kidney
2
liver
Project
119
AMP
36
HPAP
Genome assembly (visualization)
29
hg19
26
GRCh38
Lab
119
AMP-T2D consortium
36
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
Transcription
BIOSAMPLE
ASSAY
155 results
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RNA microarray
snATAC-seq
ATAC-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 7 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
2
6
osteoblast
1
1
pancreatic beta cell
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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