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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
117
ChIP-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
511
Transcription
117
DNA binding
41
DNA accessibility
6
DNA methylation
Target of assay
90
histone
90
histone modification
58
broad histone mark
32
narrow histone mark
22
control
5
transcription factor
4
RNA binding protein
Date released
649
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
288
October, 2019
216
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
115
May, 2019
105
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
621
bam
589
bigWig
507
tsv
105
bed narrowPeak
94
bigBed narrowPeak
89
txt
45
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
764
Homo sapiens
Biosample type
655
tissue
53
primary cell
30
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
116
blood vessel
116
vasculature
87
heart
artery
37
epithelium
34
pancreas
28
brain
13
kidney
13
limb
8
skeleton
7
musculature of body
3
liver
Project
719
AMP
45
HPAP
Genome assembly (visualization)
604
hg19
597
GRCh38
Lab
719
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
131
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
artery
BIOSAMPLE
ASSAY
764 results
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Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
ascending aorta
16
thoracic aorta
16
+ See 23 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
kidney epithelial cell
5
osteoblast
1
1
1
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
See all biosamples
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