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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
total RNA-seq
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
519
Transcription
49
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
581
February, 2021
400
November, 2017
382
August, 2017
333
May, 2020
312
August, 2021
305
May, 2021
257
October, 2019
176
June, 2019
142
February, 2023
130
July, 2018
120
May, 2022
115
May, 2019
94
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
47
September, 2023
46
March, 2020
40
September, 2020
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
2
December, 2019
1
August, 2018
1
August, 2022
1
June, 2018
1
October, 2022
Available data
528
bam
509
tsv
507
bigWig
39
fastq
23
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
581
Homo sapiens
Biosample type
461
tissue
70
cell line
42
primary cell
8
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
8
kidney
8
skeleton
epithelium
6
limb
6
pancreas
3
liver
Project
542
AMP
39
HPAP
Genome assembly (visualization)
530
hg19
524
GRCh38
Lab
542
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
epithelium
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
581 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
adipocyte
4
4
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