Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
570
total RNA-seq
111
single cell RNA-seq
85
RNA microarray
51
ChIP-seq
27
snATAC-seq
26
ATAC-seq
6
WGBS
4
Capture-C
3
STARR-seq
2
Hi-C
2
pCHi-C
1
whole genome sequencing assay
Assay category
681
Transcription
53
DNA accessibility
51
DNA binding
6
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
16
transcription factor
15
control
11
narrow histone mark
9
broad histone mark
1
RNA binding protein
Date released
699
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
200
May, 2022
197
February, 2023
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
674
tsv
613
bam
598
bigWig
84
txt
57
bed narrowPeak
45
fastq
32
tagAlign
7
bed bed3+
4
bed bedgraph
2
bed bed3
2
bedpe bed3+
1
csv
1
hic
1
vcf
Organism
887
Homo sapiens
Biosample type
630
tissue
138
cell line
68
in vitro differentiated cells
52
primary cell
Organ
460
connective tissue
387
adipose tissue
158
heart
150
bone element
kidney
72
blood vessel
72
vasculature
68
artery
38
epithelium
38
liver
36
pancreas
8
embryo
skeleton
6
limb
Project
843
AMP
45
HPAP
Genome assembly (visualization)
625
hg19
601
GRCh38
Lab
805
AMP-T2D consortium
45
Klaus Kaestner, Upenn
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
131
inconsistent ontology term
27
audit script error
1
inconsistent replicate
organ_slims!
kidney
skeleton
BIOSAMPLE
ASSAY
888 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
Capture-C
STARR-seq
Hi-C
pCHi-C
whole genome sequencing assay
tissue
adipose tissue
381
bone element
84
bone tissue
58
heart left ventricle
18
left cardiac atrium
18
+ See 15 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
HepG2
9
18
1
2
1
1
1
EndoC_BH1
26
2
H1-hESC
8
iPSC derived cell line
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
5
1
osteoblast
1
1
primary cell
Langerhans cell
12
27
pancreatic alpha cell
6
hepatocyte
4
osteoblast
1
1
1
See all biosamples
Download