Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
41
DNA accessibility
18
Transcription
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
162
February, 2021
151
May, 2020
120
May, 2019
108
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
89
txt
45
fastq
19
bam
15
bed narrowPeak
14
tsv
8
tagAlign
6
bigWig
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
162
Homo sapiens
Biosample type
93
tissue
47
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
vasculature
8
kidney
skeleton
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
liver
Project
117
AMP
45
HPAP
Genome assembly (visualization)
21
hg19
15
GRCh38
Lab
117
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
skeleton
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
162 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
See all biosamples
Download