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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
84
RNA microarray
27
snATAC-seq
13
ATAC-seq
13
single cell RNA-seq
6
WGBS
1
pCHi-C
Assay category
480
Transcription
40
DNA accessibility
6
DNA methylation
Date released
611
February, 2021
364
August, 2017
362
May, 2021
340
May, 2020
269
October, 2019
200
May, 2022
199
February, 2023
168
July, 2018
147
August, 2021
134
June, 2019
111
May, 2019
97
July, 2019
88
November, 2017
73
September, 2018
61
October, 2018
59
September, 2020
53
March, 2020
52
April, 2019
52
December, 2017
49
April, 2018
45
November, 2019
39
February, 2018
35
May, 2024
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
16
January, 2021
11
September, 2017
10
November, 2020
7
August, 2020
7
December, 2019
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
4
December, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
1
May, 2023
Available data
477
bam
473
tsv
468
bigWig
84
txt
45
fastq
9
bed narrowPeak
4
bed bedgraph
1
bed bed3
1
bed bed3+
1
csv
Organism
611
Homo sapiens
Biosample type
537
tissue
cell line
48
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
1
liver
Project
566
AMP
45
HPAP
Genome assembly (visualization)
481
hg19
476
GRCh38
Lab
566
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
27
audit script error
target.investigated_as!
transcription factor
biosample_type!
cell line
organ_slims!
kidney
BIOSAMPLE
ASSAY
611 results
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total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 9 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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