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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 103ATAC-seq
  • 93total RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1single cell RNA-seq
Assay category
  • 105DNA accessibility
  • 94Transcription
Date released
  • 715February, 2021
  • 411August, 2017
  • 406November, 2017
  • 399May, 2021
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 4August, 2018
  • 4March, 2023
  • 3June, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 76fastq
  • 63bed narrowPeak
  • 16tsv
  • 10bed bed3
  • 7txt
  • 4bed bed3+
  • 3bed bedgraph
  • 3bigWig
Organism
  • 204Homo sapiens
Biosample type
  • 95tissue
  • 88primary cell
  • 16in vitro differentiated cells
  • 6cell line
Organ
  • 61pancreas
  • 57epithelium
  • 36heart
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 31eye
  • 14connective tissue
  • 8bone element
  • 8skeleton
  • 1adipose tissue
  • 1brain
Project
  • 106AMP
  • 76HPAP
  • 23T1D
Genome assembly (visualization)
  • 45hg19
  • 35GRCh38
Lab
  • 106AMP-T2D consortium
  • 76Klaus Kaestner, Upenn
  • 23Kyle Gaulton, UCSD
Audit category:
  • 16inconsistent ontology term
BIOSAMPLE
ASSAY

205 results

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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery35
islet of Langerhans1152
retina152
pigmented layer of retina122
acetabular part of hip bone11
primary cell
exocrine cell39
pancreatic alpha cell27
pancreatic beta cell10
gabaergic neuron3
glutamatergic neuron3
in vitro differentiated cells
chondrocyte5
immature adipocyte22
adipocyte11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH1321
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