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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ATAC-seq
12
total RNA-seq
5
GRO-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
95
DNA accessibility
13
Transcription
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
65
bed narrowPeak
16
tsv
11
bigWig
10
bed bed3
7
txt
5
fastq
4
bed bed3+
3
bed bedgraph
Organism
113
Homo sapiens
Biosample type
79
tissue
20
in vitro differentiated cells
12
primary cell
2
cell line
1
stem cell
Organ
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
15
connective tissue
15
epithelium
8
bone element
8
skeleton
2
adipose tissue
1
blood
1
bodily fluid
1
brain
1
embryo
1
musculature of body
1
pancreas
Project
114
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
48
hg19
35
GRCh38
5
hg18
Lab
111
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
114 results
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ATAC-seq
total RNA-seq
GRO-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
adipose tissue
2
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Posterior foregut
1
+ See 6 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
1
GM12878
1
stem cell
hESC
1
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