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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
11
ATAC-seq
10
snATAC-seq
9
single cell RNA-seq
5
GRO-seq
1
Hi-C
Assay category
49
DNA binding
21
DNA accessibility
9
Transcription
1
3D chromatin structure
Target of assay
28
transcription factor
12
histone
12
histone modification
10
broad histone mark
7
control
2
RNA binding protein
2
chromatin remodeller
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
57
fastq
52
bigWig
49
bam
42
bed narrowPeak
36
bigBed narrowPeak
14
tagAlign
4
bed broadPeak
Organism
84
Homo sapiens
Biosample type
51
tissue
29
cell line
4
in vitro differentiated cells
1
stem cell
Organ
28
blood
28
bodily fluid
19
lung
16
brain
8
spleen
5
pancreas
2
adipose tissue
2
connective tissue
1
embryo
1
liver
1
musculature of body
Project
66
AMP
19
LungMap
Genome assembly (visualization)
46
hg19
44
GRCh38
5
hg18
Lab
65
AMP-T2D consortium
19
Xin Sun, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent control
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
GRO-seq
Hi-C
tissue
lung
10
9
brain
15
spleen
7
1
body of pancreas
4
adipose tissue
1
+ See 4 more…
cell line
GM12878
27
1
HepG2
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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