Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ChIP-seq
89
total RNA-seq
15
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
5
GRO-seq
1
FAIRE-seq
Assay category
296
DNA binding
89
Transcription
21
DNA accessibility
15
DNA methylation
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
299
fastq
287
bigWig
282
bam
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
419
Homo sapiens
Biosample type
286
tissue
72
in vitro differentiated cells
66
primary cell
1
cell line
1
stem cell
Organ
195
pancreas
126
connective tissue
58
adipose tissue
54
liver
36
epithelium
27
musculature of body
1
blood
1
bodily fluid
1
embryo
Project
419
AMP
7
HPAP
Genome assembly (visualization)
279
hg19
256
GRCh38
5
hg18
Lab
419
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
426 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
GRO-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
1
4
pancreas
14
+ See 4 more…
in vitro differentiated cells
adipocyte
67
1
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
primary cell
pancreatic alpha cell
13
6
skeletal muscle myoblast
15
1
2
pancreatic beta cell
13
3
pancreatic endocrine cell
12
pancreatic acinar cell
1
cell line
GM12878
1
stem cell
hESC
1
See all biosamples
Download