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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
total RNA-seq
165
ChIP-seq
37
ATAC-seq
17
pCHi-C
5
GRO-seq
3
single cell RNA-seq
1
DNAme array
Assay category
185
Transcription
165
DNA binding
37
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
314
bigWig
280
bam
176
tsv
133
bed narrowPeak
90
tagAlign
8
fastq
2
bed bed3+
Organism
410
Homo sapiens
Biosample type
209
primary cell
136
in vitro differentiated cells
42
tissue
22
cell line
1
stem cell
Organ
62
pancreas
27
epithelium
3
connective tissue
3
embryo
3
heart
1
adipose tissue
1
blood
1
bodily fluid
1
bone element
1
bone marrow
1
musculature of body
1
thymus
Project
257
AMP
153
T1D
Genome assembly (visualization)
322
hg19
279
GRCh38
5
hg18
Lab
235
Kyle Gaulton, UCSD
175
AMP-T2D consortium
Audit category:
91
inconsistent ontology term
BIOSAMPLE
ASSAY
410 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
single cell RNA-seq
DNAme array
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 14 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
Posterior foregut
1
+ See 14 more…
tissue
islet of Langerhans
36
adipose tissue
1
cardiac atrium
1
cardiac ventricle
1
pancreas
1
+ See 2 more…
cell line
EndoC_BH1
4
1
16
GM12878
1
stem cell
hESC
1
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