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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
727
total RNA-seq
173
ChIP-seq
84
RNA microarray
59
ATAC-seq
27
snATAC-seq
19
pCHi-C
18
single cell RNA-seq
6
WGBS
5
GRO-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
749
Transcription
173
DNA binding
86
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
21
transcription factor
12
control
5
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
862
bigWig
849
bam
732
tsv
156
bed narrowPeak
98
tagAlign
89
txt
50
fastq
6
csv
4
bed bed3+
4
bed bedgraph
2
bed bed3
1
hic
Organism
1123
Homo sapiens
Biosample type
587
tissue
255
primary cell
162
in vitro differentiated cells
120
cell line
3
stem cell
Organ
458
connective tissue
387
adipose tissue
151
bone element
93
pancreas
69
heart
66
artery
66
blood vessel
66
vasculature
58
epithelium
8
kidney
8
skeleton
6
limb
3
embryo
3
liver
1
blood
1
bodily fluid
1
bone marrow
1
musculature of body
1
thymus
Project
924
AMP
153
T1D
45
HPAP
4
community
1
ITG
Genome assembly (visualization)
893
hg19
845
GRCh38
5
hg18
Lab
842
AMP-T2D consortium
235
Kyle Gaulton, UCSD
45
Klaus Kaestner, Upenn
4
Anna Gloyn, Oxford
1
ITG
Audit category:
218
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
1127 results
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Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
WGBS
GRO-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
36
kidney
5
+ See 19 more…
primary cell
monocyte
52
85
13
1
1
Langerhans cell
27
12
CD8-positive, alpha-beta T cell
2
33
1
pancreatic alpha cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
+ See 15 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
cardiac precursors (cardiac muscle cell)
18
induced pluripotent stem cell
9
adipocyte
4
4
+ See 16 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
30
1
16
EndoC-BH1
1
1
HepG2
1
1
iPSC derived cell line
2
+ See 1 more…
stem cell
SB Ad3.1
1
1
hESC
1
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