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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
total RNA-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
2
snATAC-seq
Assay category
85
Transcription
13
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
0
January, 2019
Available data
76
fastq
5
bam
5
bigWig
3
bed narrowPeak
2
tsv
Organism
106
Homo sapiens
Biosample type
76
primary cell
22
tissue
8
cell line
Organ
62
pancreas
40
epithelium
Project
AMP
76
HPAP
30
T1D
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
7
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
106 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
snATAC-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
7
11
2
2
cell line
EndoC_BH1
2
3
1
2
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