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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
33
single cell RNA-seq
21
snATAC-seq
4
total RNA-seq
3
ChIP-seq
Assay category
60
DNA accessibility
41
DNA methylation
37
Transcription
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
0
January, 2019
Available data
134
zippedFastqFolder
5
bam
5
bigWig
3
bed narrowPeak
2
tsv
Organism
141
Homo sapiens
Biosample type
134
primary cell
4
tissue
3
cell line
Organ
87
pancreas
83
epithelium
Project
AMP
134
HPAP
7
T1D
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
134
Klaus Kaestner, Upenn
7
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
141 results
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WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
total RNA-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
islet of Langerhans
2
2
cell line
EndoC_BH1
2
1
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