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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
single cell RNA-seq
27
total RNA-seq
25
ChIP-seq
3
ATAC-seq
Assay category
110
Transcription
25
DNA binding
3
DNA accessibility
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
115
fastq
79
bam
78
bigWig
54
tsv
21
bed narrowPeak
21
bigBed narrowPeak
19
zippedFastqFolder
Organism
138
Homo sapiens
Biosample type
102
primary cell
23
cell line
13
tissue
Organ
58
pancreas
52
epithelium
18
blood
18
bodily fluid
7
spleen
5
liver
2
connective tissue
Project
79
AMP
59
HPAP
Genome assembly (visualization)
78
GRCh38
75
hg19
Lab
79
AMP-T2D consortium
59
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
138 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
3
15
2
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
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cell line
GM12878
18
HepG2
5
tissue
spleen
7
islet of Langerhans
6
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