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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
268
ChIP-seq
94
total RNA-seq
9
WGBS
5
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
268
DNA binding
94
Transcription
14
DNA methylation
6
DNA accessibility
Target of assay
168
histone modification
167
histone
97
broad histone mark
69
narrow histone mark
59
transcription factor
41
control
12
RNA binding protein
8
chromatin remodeller
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
259
fastq
254
bam
252
bigWig
130
bed narrowPeak
94
tsv
73
tagAlign
44
bigBed narrowPeak
33
bed bed3+
27
bed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
375
Homo sapiens
Biosample type
291
tissue
68
in vitro differentiated cells
primary cell
23
cell line
Organ
147
pancreas
125
connective tissue
59
liver
57
adipose tissue
26
musculature of body
18
blood
18
bodily fluid
7
spleen
Project
382
AMP
Genome assembly (visualization)
255
hg19
233
GRCh38
Lab
382
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
382 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 5 more…
in vitro differentiated cells
adipocyte
67
1
cell line
GM12878
18
HepG2
5
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