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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
53
DNA binding
10
DNA accessibility
Target of assay
37
histone
37
histone modification
22
broad histone mark
16
transcription factor
15
narrow histone mark
8
RNA binding protein
7
chromatin remodeller
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
317
fastq
312
bam
298
bigWig
163
bed narrowPeak
94
tsv
85
tagAlign
63
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
28
tissue
19
primary cell
15
cell line
1
in vitro differentiated cells
Organ
17
pancreas
15
blood
15
bodily fluid
6
liver
6
spleen
3
connective tissue
3
epithelium
2
adipose tissue
Project
63
AMP
Genome assembly (visualization)
63
hg19
59
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2018
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
pancreas
12
spleen
6
liver
5
islet of Langerhans
1
1
adipose tissue
1
+ See 2 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
GM12878
15
in vitro differentiated cells
adipocyte
1
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