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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
total RNA-seq
38
ChIP-seq
33
ATAC-seq
2
Hi-C
Assay category
50
Transcription
38
DNA binding
33
DNA accessibility
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
15
transcription factor
10
broad histone mark
7
RNA binding protein
7
narrow histone mark
6
chromatin remodeller
6
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
89
bam
64
bigWig
58
bed narrowPeak
50
tsv
37
fastq
21
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
123
Homo sapiens
Biosample type
72
tissue
39
cell line
7
primary cell
5
in vitro differentiated cells
Organ
63
pancreas
23
epithelium
18
blood
18
bodily fluid
12
brain
7
spleen
6
liver
3
adipose tissue
3
blood vessel
3
connective tissue
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
116
AMP
7
HPAP
Genome assembly (visualization)
90
GRCh38
85
hg19
Lab
116
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
23
inconsistent ontology term
BIOSAMPLE
ASSAY
123 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans
19
19
1
spleen
7
Ammon's horn
1
C1 segment of cervical spinal cord
1
adipose tissue(adipose white tissue)
1
+ See 23 more…
cell line
GM12878
18
EndoC_BH1
1
13
1
1
HepG2
5
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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