Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
56
total RNA-seq
21
ATAC-seq
1
single cell RNA-seq
Assay category
57
DNA binding
57
Transcription
21
DNA accessibility
Target of assay
39
histone
39
histone modification
21
broad histone mark
18
narrow histone mark
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
4
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
110
fastq
105
bigWig
102
bam
67
bed narrowPeak
56
tsv
35
bigBed narrowPeak
1
csv
Organism
135
Homo sapiens
Biosample type
80
primary cell
32
tissue
23
cell line
Organ
80
pancreas
68
epithelium
18
blood
18
bodily fluid
12
brain
7
spleen
6
liver
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
128
AMP
7
HPAP
Genome assembly (visualization)
105
GRCh38
98
hg19
Lab
128
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
135 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic alpha cell
10
8
pancreatic beta cell
10
6
pancreatic acinar cell
8
2
3
pancreatic endocrine cell
11
+ See 1 more…
tissue
spleen
7
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
anterior cingulate cortex
1
+ See 21 more…
cell line
GM12878
18
HepG2
5
See all biosamples
Download